PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG500000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 290aa MW: 31963.3 Da PI: 8.8503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG500000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.8	1.4e-16	48	94	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L A+eY+k+Lq Pavir.1NG500000.1.p 48 VHNLSEKRRRSRINEKMKALQTLVPNS-----SKTDKASMLDDAIEYLKQLQ 94 6***********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-20	41	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-20	42	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.076	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.00E-16	47	98	No hit	No description
Pfam	PF00010	3.3E-14	48	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-19	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDAQQLDLFL RHQSMANICE SEDALGSSES EPARPARPRG KRSRAAEVHN LSEKRRRSRI 60 NEKMKALQTL VPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYLPP ANLSGVPEAL 120 APSEVCAMLN KSGVKASDSG VALLPVNQSS VAHHSFNPPN HDQRHNKLLV LQSIPTSSTT 180 IARFLQEPAQ ANLQSFQLAV HPEMIFKEDM MLKHRLTSVQ ETTSLPGHEV KLASQEACMV 240 NSGRFDRGSQ RKEVARDMMP KNTESVLFMP YLHSLQSGDA NGGPRAESS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954276.1	1e-170	PREDICTED: transcription factor SPATULA
TrEMBL	K3YUQ7	1e-171	K3YUQ7_SETIT; Uncharacterized protein
STRING	Si017762m	1e-166	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3336	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	3e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG500000.1.p